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Man Pages


Manual Reference Pages  -  BIO::MAGETAB::UTIL::WRITER (3)

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NAME

Bio::MAGETAB::Util::Writer - Export of MAGE-TAB objects.

CONTENTS

SYNOPSIS



 use Bio::MAGETAB::Util::Writer;
 my $writer = Bio::MAGETAB::Util::Writer->new({
    magetab => $magetab_container,
 });

 $writer->write();



DESCRIPTION

This class is designed to export all the MAGE-TAB objects from a given Bio::MAGETAB container, creating as many IDFs, ADFs and SDRFs as are necessary to do so.

Export of the individual MAGE-TAB components is delegated to separate writer classes. See the ADF, IDF and SDRF classes if you want more control over the export process.

ATTRIBUTES

magetab The Bio::MAGETAB container to export. This is a required attribute. See the Bio::MAGETAB class for more information on this container class.
export_version A string indicating which version of the MAGE-TAB format to export; currently restricted to 1.0 or 1.1. The default is 1.1.

METHODS

write Exports all objects into their respective MAGE-TAB components. Filenames are automatically generated from Investigation title, ArrayDesign uri (or name) and SDRF uri attributes.

SEE ALSO

Bio::MAGETAB

AUTHOR

Tim F. Rayner <tfrayner@gmail.com>

LICENSE

This library is released under version 2 of the GNU General Public License (GPL).
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perl v5.20.3 BIO::MAGETAB::UTIL::WRITER (3) 2013-01-13

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