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NAMEbp_mrtrans - implement a transformer of alignments from protein to mrna coordinates SYNOPSISUsage:
DESCRIPTIONThis script will convert a protein alignment back into a cDNA. Loosely based on Bill Pearson's mrtrans. The options are: -o filename - the output filename [default STDOUT] -of format - output sequence format (multiple sequence alignment) [default phylip] -i filename - the input filename [required] -if format - input sequence format (multiple sequence alignment) [ default clustalw] -s --seqdb filename - the cDNA sequence database file -sf --seqformat - the cDNA seq db format (flatfile sequence format) -h - this help menu AUTHORJason Stajich, jason-at-bioperl-dot-org
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