bp_seqcut.pl - cut FASTA sequences with a given range
bp_seqcut.pl [options -h,-s,-e,-f,-w] <FILES>...
bp_seqcut.pl [options -h,-f,-w] s-e <FILES>...
-h this help message
-s which residue to start cutting on
-e which residue to finish cutting on
-f format of the files, defaults to FASTA but you can specify anything supported by SeqIO from BioPerl
-w hard wrap width, this might not be supported depending on which format you are using
A script to cut FASTA sequences with a given range `fastacut -s 1 -e 10 *.fasta`
or `fastacut 1-10 *.fasta`. This is just a convenience wrapper around the
Bio::SeqIO module. Useful if you wish to trim out a section of an alignment to
build a profile of a specific region of sequence.
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2010-11-22 - Matt Oates First features added.
Used to parse command line options. Pod::Usage
for usage and help output. Bio::SeqIO
Used to cut up sequences and