bp_split_seq - splits a sequence into equal sized chunks with an optional
bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in
The script will split sequences into chunks
-c Desired length of the resulting sequences.
-f Input file (must be FASTA format).
-o Overlapping range between the resulting sequences.
-i Create an index file with the resulting sequence files. This is
useful if you want to pass this list as input arguments into
another programs (i.e. CLUSTAL, HMMER, etc.).
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
firstname.lastname@example.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>