-h [ --help ] display this help and exit --verbose be loud and noisy --verbose1 be very loud and noisy -v [ --verbose2 ] be extremly loud and noisy --top arg atomistic topology file --filter arg (=*) filter molecule names --radialcut arg (=0) radial cutoff: distance from center where bead is considered --minrad arg (=0) minimal distance a parcle has to be apart from center to be considerd --refmol arg Reference molecule --rbinw arg (=0) Do multiple r_bins multiple histograms
--cg arg coarse graining mapping and bond definitions (xml-file) --map-ignore arg list of molecules to ignore separated by ; --no-map disable mapping and act on original trajectory
--trj arg atomistic trajectory file --begin arg (=0) skip frames before this time (only works for Gromacs files) --first-frame arg (=0) start with this frame --nframes arg process the given number of frames
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