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LOCARNAP-REALIGN-ALL(1) User Contributed Perl Documentation LOCARNAP-REALIGN-ALL(1)

locarnap-realign-all

locarnap-realign-all [options] <annotation-file>

Calls mlocarna on sequence sets in Realign-Sequences as generated by a call to locarnap-revisit-RNAz-hits.pl. The script is usually used as second step in a pipeline for refining RNAz hits with LocARNA-P.

Brief help message
Full documentation
Test only. Jobs are not run or submitted to SGE!
Realign reverse complement
Run the realignment on the local machine (without the use of SGE).
Use <k> threads for multicore support.

Writes result files to Alignment-Results, takes alignment jobs from annotation file

Unless option --run-locally is given, distribute jobs to SGE-cluster, where we assume that the script is run on a submission host!

2022-11-19 perl v5.32.1

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