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NAMElocarna_deviation - manual page for locarna_deviation (LocARNA 2.0.0) SYNOPSISdeviation <aln-file> <ref-aln-file> DESCRIPTIONlocarna_deviation - compare an alignment to a reference alignment By calculating similarity measures of an alignment to a reference alignment, this small program based on the locarna library is useful for benchmarking alignment tools. OPTIONS
The sequences of <aln-file> have to be contained in the alignment of <aln-ref-file>. In addition to the deviation, print match sps and shift score
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