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NORMALIZE-IHS(1) normalize-iHS (VCF genotype) NORMALIZE-IHS(1)

normalize-iHS

normalizeHS -s 0.01 -f input.txt

normalizes iHS or XP-EHH scores.


A cross-population extended haplotype homozygosity (XP-EHH) score is
directional: a positive score suggests selection is likely to have
happened in population A, whereas a negative score suggests the same
about population B. See for example
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687721/
Output : **normalize-iHS** adds one additional column to input (normalized score).
required: -f            -- Output from iHS or XPEHH 
optional: -s            -- Max AF diff for window [0.01]
Type: genotype

    

0
Success
not 0
Failure

vcflib(1)

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

Erik Garrison and vcflib contributors.
normalize-iHS (vcflib)

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