NAME

permuteGPAT++

SYNOPSIS

permuteGPAT++ -f gpat.txt -n 5 -s 1

DESCRIPTION

permuteGPAT++ is a method for adding empirical p-values to a GPAT++ score.

OPTIONS

     Currently **permuteGPAT++** only supports wcFst, but will be extended.    
OUTPUT: **permuteGPAT++** will append three additional columns:


        1. The number of successes                         


        2. The number of trials                            


        3. The empirical p-value                           
file:    f   -- argument: the input file     
number:  n   -- argument: the number of permutations to run for each value [1000]
success: s   -- argument: stop permutations after 's' successes [1]
Type: phenotype
    

EXIT VALUES

0

Success

not 0

Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2025 (C) Pjotr Prins.

AUTHORS

Erik Garrison and vcflib contributors.