NAME

permuteSmooth

SYNOPSIS

permuteSmooth -s wcFst.smooth.txt -f wcFst.txt -n 5 -s 1

DESCRIPTION

permuteSmooth is a method for adding empirical p-values smoothed wcFst scores.

OPTIONS

Required:


      file:     f   -- argument: original wcFst data     


      smoothed: s   -- argument: smoothed wcFst data     


      format:   y   -- argument: [swcFst, segwcFst]      
Optional:


      number:   n   -- argument: the number of permutations to run for each value [1000]


      success:  u   -- argument: stop permutations after 's' successes [1]


      success:  x   -- argument: number of threads [1]
OUTPUT: **permuteSmooth** will append three additional columns:


        1. The number of successes                            


        2. The number of trials                               


        3. The empirical p-value                              
Type: statistics
    

EXIT VALUES

0

Success

not 0

Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2025 (C) Pjotr Prins.

AUTHORS

Erik Garrison and vcflib contributors.