I/O Options:

Command line options for input and output (pre-)processing

-i, --input=filename

Specify an input file name. If argument is missing the energy parameter input can be supplied via 'stdin'.

-o, --output=filename

Specify an output file name. If argument is missing the converted energy parameters are printed to 'stdout'.

--vanilla

Print just as much as needed to represent the given energy parameters data set. This option overrides all other output settings!

(default=off)

--dump

Just dump Vienna 1.8.4 energy parameters in format used since 2.0. This option skips any energy parameter input!

(default=off)

--silent

Print just energy parameters and appropriate comment lines but suppress all other output

(default=off)

--without-HairpinE

Do not print converted hairpin energies and enthalpies

(default=off)

--without-StackE

Do not print converted stacking energies and enthalpies

(default=off)

--without-IntE

Do not print converted internal loop energies, enthalpies and asymetry factors

(default=off)

--without-BulgeE

Do not print converted bulge loop energies and enthalpies

(default=off)

--without-MultiE

Do not print converted multi loop energies and enthalpies

(default=off)

--without-MismatchE

Do not print converted exterior loop mismatch energies and enthalpies

(default=off)

--without-MismatchH

Do not print converted hairpin mismatch energies and enthalpies

(default=off)

--without-MismatchI

Do not print converted internal loop mismatch energies and enthalpies

(default=off)

--without-MismatchM

Do not print converted multi loop mismatch energies and enthalpies

(default=off)

--without-Dangle5

Do not print converted 5' dangle energies and enthalpies

(default=off)

--without-Dangle3

Do not print converted 3' dangle energies and enthalpies

(default=off)

--without-Misc

Do not print converted Misc energies and enthalpies (TerminalAU, DuplexInit, lxc)

(default=off)

--log-level=level

Set log level threshold. (default=`2')

By default, any log messages are filtered such that only warnings (level 2) or errors (level 3) are printed. This setting allows for specifying the log level threshold, where higher values result in fewer information. Log-level 5 turns off all messages, even errors and other critical information.

--log-file[=filename]

Print log messages to a file instead of stderr. (default=`RNAparconv.log')

--log-time

Include time stamp in log messages.

(default=off)

--log-call

Include file and line of log calling function.

(default=off)