NAME

segmentIhs

SYNOPSIS

segmentFst -s 2 -f iHS.normalized.output.txt

DESCRIPTION

Creates genomic segments (bed file) for regions with high wcFst

OPTIONS

Output : 8 columns :                 


     1. Seqid                        


     2. Start (zero based)           


     3. End   (zero based)           


     4. Average iHS                  


     5. Average high Fst (iHS > -s)  


     6. N iHS values in segment      


     7. N high iHS values in segment 


     8. Segment length               
required: -f            -- Output from normalizeIHS     
optional: -s            -- High absolute iHS cutoff [2] 
Type: statistics
    

EXIT VALUES

0

Success

not 0

Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2025 (C) Pjotr Prins.

AUTHORS

Erik Garrison and vcflib contributors.