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SEGMENTIHS(1) segmentIhs (VCF statistics) SEGMENTIHS(1)

segmentIhs

segmentFst -s 2 -f iHS.normalized.output.txt

Creates genomic segments (bed file) for regions with high wcFst 


Output : 8 columns :                 
     1. Seqid                        
     2. Start (zero based)           
     3. End   (zero based)           
     4. Average iHS                  
     5. Average high Fst (iHS > -s)  
     6. N iHS values in segment      
     7. N high iHS values in segment 
     8. Segment length               
required: -f            -- Output from normalizeIHS     
optional: -s            -- High absolute iHS cutoff [2] 
Type: statistics

0
Success
not 0
Failure

vcflib(1)

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

Erik Garrison and vcflib contributors.
segmentIhs (vcflib)
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