NAME

vcfcleancomplex

SYNOPSIS

vcfcleancomplex

DESCRIPTION

Removes reference-matching sequence from complex alleles and adjusts records to reflect positional change.

OPTIONS

Generate a VCF stream in which 'long' non-complexalleles have their position corrected.
assumes that VCF records can't overlap 5'->3'
Type: transformation
    

EXIT VALUES

0

Success

not 0

Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2025 (C) Pjotr Prins.

AUTHORS

Erik Garrison and vcflib contributors.