NAME

extract-genes - Extract genes from a BED files containing GFF features

SYNOPSIS

extract-genes feature-file.bed

DESCRIPTION

extract-genes extracts genes from a BED file containing features like those in a GFF, and saves each gene to a separate file under the subdirectory Genes-feature-file.

The resulting files are suitable for visualizing with feature-view(1).

EXAMPLE

peak-classifier peaks.bed features.gff3 overlaps.tsv
extract-genes features.bed
feature-view Genes-features/2-2432432-2423444.bed

SEE ALSO

peak-classifier(1), filter-overlaps(1), feature-view(1)

BUGS

Please report bugs to the author and send patches in unified diff format. (man diff for more information)

AUTHOR

J. Bacon