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fastq-scum(1) FreeBSD General Commands Manual fastq-scum(1)

fastq-scum file.fastq[.xz|.bz2|.gz]

file    FASTQ file, optinally compressed with xz, bzip2, or gzip

fastq-scum scans a FASTQ file for known adapters and poly-A tails of length 8 or more, showing matching sequences with the adapters or tails in color. This helps the user determine optimal parameters for use with fastq-trim.

0 on success, non-zero error code otherwise

fastq-scum file.fastq.xz

fastq-trim


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