NAME

feature-view - Visualize GFF features using Matplotlib

SYNOPSIS

feature-view feature-file.bed

DESCRIPTION

feature-view is a simple script that plots the subfeatures of a chromosomal feature such as a gene as a horizontal bar graph. The input file is a BED file containing a single feature such as a gene, with subfeatures such as introns, exons, and UTRs. Suitable input files are typically generated by running peak-classifier(1), and then extracting the genes from the resulting BED file containing augmented GFF features.

EXAMPLE

peak-classifier peaks.bed features.gff3 overlaps.tsv
extract-genes features.bed
feature-view Genes-features/2-2432432-2423444.bed

SEE ALSO

peak-classifier(1), filter-overlaps(1), extract-genes(1)

BUGS

Please report bugs to the author and send patches in unified diff format. (man diff for more information)

AUTHOR

J. Bacon