SYNOPSIS

fasda heatmap [--debug] features-file cond1-file cond2-file

ARGUMENTS

--debug         Show Python data structures used for heatmap
features-file   Reduced feature list, one per line
cond[12]-file   Full normalized counts lists output by FASDA

DESCRIPTION

Generate a heatmap from a filtered FASDA fold-change list. The features file provided by the first argument is a greatly reduced list of significant DEGs (differentially expressed genes) or transcripts, one per line:

YKL103C_mRNA
YIR015W_mRNA
YLR054C_mRNA
YER011W_mRNA

The normalized counts files are the output of "fasda normalize".

RETURN VALUES

0 on success, non-zero error codes otherwise

EXAMPLES

heatmap features.txt \


    Results/11-fasda-kallisto/cond1-norm-3.tsv \


    Results/11-fasda-kallisto/cond2-norm-3.tsv

SEE ALSO

fasda-normalize(1), fasda-fold-change(1), fasda(1)