PDL::Basic -- Basic utility functions for PDL
This module contains basic utility functions for creating and manipulating
piddles. Most of these functions are simplified interfaces to the more
flexible functions in the modules PDL::Primitive and PDL::Slices.
use PDL::Basic;
Fills a piddle with X index values. Uses similar specifications to zeroes and
new_from_specification.
CAVEAT:
If you use the single argument piddle form (top row in the usage table) the
output will have the same type as the input; this may give surprising results
if, e.g., you have a byte array with a dimension of size greater than 256. To
force a type, use the third form.
$x = xvals($somearray);
$x = xvals([OPTIONAL TYPE],$nx,$ny,$nz...);
$x = xvals([OPTIONAL TYPE], $somarray->dims);
etc. see zeroes.
pdl> print xvals zeroes(5,10)
[
[0 1 2 3 4]
[0 1 2 3 4]
[0 1 2 3 4]
[0 1 2 3 4]
[0 1 2 3 4]
[0 1 2 3 4]
[0 1 2 3 4]
[0 1 2 3 4]
[0 1 2 3 4]
[0 1 2 3 4]
]
Fills a piddle with Y index values. See the CAVEAT for xvals.
$x = yvals($somearray); yvals(inplace($somearray));
$x = yvals([OPTIONAL TYPE],$nx,$ny,$nz...);
etc. see zeroes.
pdl> print yvals zeroes(5,10)
[
[0 0 0 0 0]
[1 1 1 1 1]
[2 2 2 2 2]
[3 3 3 3 3]
[4 4 4 4 4]
[5 5 5 5 5]
[6 6 6 6 6]
[7 7 7 7 7]
[8 8 8 8 8]
[9 9 9 9 9]
]
Fills a piddle with Z index values. See the CAVEAT for xvals.
$x = zvals($somearray); zvals(inplace($somearray));
$x = zvals([OPTIONAL TYPE],$nx,$ny,$nz...);
etc. see zeroes.
pdl> print zvals zeroes(3,4,2)
[
[
[0 0 0]
[0 0 0]
[0 0 0]
[0 0 0]
]
[
[1 1 1]
[1 1 1]
[1 1 1]
[1 1 1]
]
]
X axis values between endpoints (see xvals).
$a = zeroes(100,100);
$x = $a->xlinvals(0.5,1.5);
$y = $a->ylinvals(-2,-1);
# calculate Z for X between 0.5 and 1.5 and
# Y between -2 and -1.
$z = f($x,$y);
"xlinvals", "ylinvals" and "zlinvals" return a
piddle with the same shape as their first argument and linearly scaled values
between the two other arguments along the given axis.
Y axis values between endpoints (see yvals).
See xlinvals for more information.
Z axis values between endpoints (see zvals).
See xlinvals for more information.
X axis values logarithmically spaced between endpoints (see xvals).
$a = zeroes(100,100);
$x = $a->xlogvals(1e-6,1e-3);
$y = $a->ylinvals(1e-4,1e3);
# calculate Z for X between 1e-6 and 1e-3 and
# Y between 1e-4 and 1e3.
$z = f($x,$y);
"xlogvals", "ylogvals" and "zlogvals" return a
piddle with the same shape as their first argument and logarithmically scaled
values between the two other arguments along the given axis.
Y axis values logarithmically spaced between endpoints (see yvals).
See xlogvals for more information.
Z axis values logarithmically spaced between endpoints (see zvals).
See xlogvals for more information.
Synonym for ndcoords - enumerates all coordinates in a PDL or dim list, adding
an extra dim on the front to accommodate the vector coordinate index (the form
expected by indexND, range, and interpND). See ndcoords for more detail.
$indices = allaxisvals($pdl); $indices = allaxisvals(@dimlist); $indices =
allaxisvals($type,@dimlist);
Enumerate pixel coordinates for an N-D piddle
Returns an enumerated list of coordinates suitable for use in indexND or range:
you feed in a dimension list and get out a piddle whose 0th dimension runs
over dimension index and whose 1st through Nth dimensions are the dimensions
given in the input. If you feed in a piddle instead of a perl list, then the
dimension list is used, as in xvals etc.
Unlike xvals etc., if you supply a piddle input, you get out a piddle of the
default piddle type: double. This causes less surprises than the previous
default of keeping the data type of the input piddle since that rarely made
sense in most usages.
$indices = ndcoords($pdl); $indices = ndcoords(@dimlist); $indices =
ndcoords($type,@dimlist);
pdl> print ndcoords(2,3)
[
[
[0 0]
[1 0]
]
[
[0 1]
[1 1]
]
[
[0 2]
[1 2]
]
]
pdl> $a = zeroes(byte,2,3); # $a is a 2x3 byte piddle
pdl> $b = ndcoords($a); # $b inherits $a's type
pdl> $c = ndcoords(long,$a->dims); # $c is a long piddle, same dims as $b
pdl> help $b;
This variable is Byte D [2,2,3] P 0.01Kb
pdl> help $c;
This variable is Long D [2,2,3] P 0.05Kb
Create histogram of a piddle
$hist = hist($data);
($xvals,$hist) = hist($data);
or
$hist = hist($data,$min,$max,$step);
($xvals,$hist) = hist($data,[$min,$max,$step]);
If "hist" is run in list context, $xvals gives the computed bin
centres as double values.
A nice idiom (with PDL::Graphics::PGPLOT) is
bin hist $data; # Plot histogram
pdl> p $y
[13 10 13 10 9 13 9 12 11 10 10 13 7 6 8 10 11 7 12 9 11 11 12 6 12 7]
pdl> $h = hist $y,0,20,1; # hist with step 1, min 0 and 20 bins
pdl> p $h
[0 0 0 0 0 0 2 3 1 3 5 4 4 4 0 0 0 0 0 0]
Create a weighted histogram of a piddle
$hist = whist($data, $wt, [$min,$max,$step]);
($xvals,$hist) = whist($data, $wt, [$min,$max,$step]);
If requested, $xvals gives the computed bin centres as type double values. $data
and $wt should have the same dimensionality and extents.
A nice idiom (with PDL::Graphics::PGPLOT) is
bin whist $data, $wt; # Plot histogram
pdl> p $y
[13 10 13 10 9 13 9 12 11 10 10 13 7 6 8 10 11 7 12 9 11 11 12 6 12 7]
pdl> $wt = grandom($y->nelem)
pdl> $h = whist $y, $wt, 0, 20, 1 # hist with step 1, min 0 and 20 bins
pdl> p $h
[0 0 0 0 0 0 -0.49552342 1.7987439 0.39450696 4.0073722 -2.6255299 -2.5084501 2.6458365 4.1671676 0 0 0 0 0 0]
Create array filled with a sequence of values
$a = sequence($b); $a = sequence [OPTIONAL TYPE], @dims;
etc. see zeroes.
pdl> p sequence(10)
[0 1 2 3 4 5 6 7 8 9]
pdl> p sequence(3,4)
[
[ 0 1 2]
[ 3 4 5]
[ 6 7 8]
[ 9 10 11]
]
Fills a piddle with radial distance values from some centre.
$r = rvals $piddle,{OPTIONS};
$r = rvals [OPTIONAL TYPE],$nx,$ny,...{OPTIONS};
Options:
Centre => [$x,$y,$z...] # Specify centre
Center => [$x,$y.$z...] # synonym.
Squared => 1 # return distance squared (i.e., don't take the square root)
pdl> print rvals long,7,7,{Centre=>[2,2]}
[
[2 2 2 2 2 3 4]
[2 1 1 1 2 3 4]
[2 1 0 1 2 3 4]
[2 1 1 1 2 3 4]
[2 2 2 2 2 3 4]
[3 3 3 3 3 4 5]
[4 4 4 4 4 5 5]
]
If "Center" is not specified, the midpoint for a given dimension of
size "N" is given by " int(N/2) " so that the midpoint
always falls on an exact pixel point in the data. For dimensions of even size,
that means the midpoint is shifted by 1/2 pixel from the true center of that
dimension.
Also note that the calculation for "rvals" for integer values does not
promote the datatype so you will have wraparound when the value calculated for
" r**2 " is greater than the datatype can hold. If you need exact
values, be sure to use large integer or floating point datatypes.
For a more general metric, one can define, e.g.,
sub distance {
my ($a,$centre,$f) = @_;
my ($r) = $a->allaxisvals-$centre;
$f->($r);
}
sub l1 { sumover(abs($_[0])); }
sub euclid { use PDL::Math 'pow'; pow(sumover(pow($_[0],2)),0.5); }
sub linfty { maximum(abs($_[0])); }
so now
distance($a, $centre, \&euclid);
will emulate rvals, while "\&l1" and "\&linfty" will
generate other well-known norms.
Fills a piddle with index values on Nth dimension
$z = axisvals ($piddle, $nth);
This is the routine, for which xvals, yvals etc are mere shorthands.
"axisvals" can be used to fill along any dimension, using a
parameter.
See also allaxisvals, which generates all axis values simultaneously in a form
useful for range, interpND, indexND, etc.
Note the 'from specification' style (see zeroes) is not available here, for
obvious reasons.
transpose rows and columns.
$b = transpose($a);
pdl> $a = sequence(3,2)
pdl> p $a
[
[0 1 2]
[3 4 5]
]
pdl> p transpose( $a )
[
[0 3]
[1 4]
[2 5]
]