|
Unix VPS
Support
FAQ
Network
Miscellaneous
|
| Bio::Phylo::Matrices::Characters(3) | User Contributed Perl Documentation | Bio::Phylo::Matrices::Characters(3) |
NAME
Bio::Phylo::Matrices::Characters - Container of character objects
SYNOPSIS
# No direct usage
DESCRIPTION
Objects of this type hold a list of Bio::Phylo::Matrices::Character objects, i.e. columns in a matrix. By default, a matrix will be initialized to hold one object of this type (which can be retrieved using $matrix->get_characters). Its main function is to facilitate NeXML serialization of matrix objects, though this may expand in the future.
METHODS
SERIALIZERS
- to_xml()
- Serializes characters to nexml format.
Type : Format convertor Title : to_xml Usage : my $xml = $characters->to_xml; Function: Converts characters object into a nexml element structure. Returns : Nexml block (SCALAR). Args : NONE
SEE ALSO
There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo> for any user or developer questions and discussions.
- Bio::Phylo::Matrices::TypeSafeData
- This object inherits from Bio::Phylo::Matrices::TypeSafeData, so the methods defined therein are also applicable to characters objects objects.
- Bio::Phylo::Manual
- Also see the manual: Bio::Phylo::Manual and <http://rutgervos.blogspot.com>.
CITATION
If you use Bio::Phylo in published research, please cite it:
Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. <http://dx.doi.org/10.1186/1471-2105-12-63>
| 2017-10-30 | perl v5.40.2 |
Visit the GSP FreeBSD Man Page Interface.
Output converted with ManDoc.