Bio::MAGETAB::Util::RewriteAE - A utility class providing methods to correct
some common errors in ArrayExpress MAGE-TAB documents.
my $rw = Bio::MAGETAB::Util::RewriteAE->new();
$rw->rewrite_sdrf( $sdrf );
$rw->rewrite_idf( $idf );
At the time of writing, many ArrayExpress MAGE-TAB documents do not fully comply
with the latest MAGE-TAB specification, and this class can be used to rewrite
such documents prior to import with the main Bio::MAGETAB classes. Typically
the order of rewriting should be as shown in the SYNOPSIS, with the SDRF being
rewritten first. This is so the RewriteAE object can record all the Term
Sources referenced by the SDRF and make sure they are all declared in the IDF.
- Given the name of an SDRF file, overwrite said file with a fixed
- Given the name of an IDF file, overwrite said file with a fixed copy.
Tim F. Rayner <email@example.com>
This library is released under version 2 of the GNU General Public License