GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages
Bio::NEXUS::TaxUnit(3) User Contributed Perl Documentation Bio::NEXUS::TaxUnit(3)
 

Bio::NEXUS::TaxUnit - Represents a taxon unit in a NEXUS file

$tu = new Bio::NEXUS::TaxUnit($name, $seq);

This module represents a taxon unit in a NEXUS file (in characters block or History block)

All feedback (bugs, feature enhancements, etc.) are greatly appreciated.

 Chengzhi Liang (liangc@umbi.umd.edu)
 Thomas Hladish (tjhladish at yahoo)

$Revision: 1.23 $

 Title   : new
 Usage   : $otu = new Bio::NEXUS::TaxUnit($name, $seq);
 Function: Creates a new Bio::NEXUS::TaxUnit object 
 Returns : Bio::NEXUS::TaxUnit object
 Args    : name and sequence of TaxUnit object

 Title   : clone
 Usage   : my $newtu = $set->clone();
 Function: clone an TaxUnit object 
 Returns : TaxUnit object
 Args    : none

 Title   : set_name
 Usage   : $tu->set_name($name);
 Function: sets the name of OTU 
 Returns : none
 Args    : name

 Title   : get_name
 Usage   : $tu->get_name();
 Function: Returns name
 Returns : name
 Args    : none

 Title   : set_seq
 Usage   : $tu->set_seq($seq);
 Function: sets the sequence of OTU 
 Returns : none
 Args    : sequence

 Title   : get_seq
 Usage   : $tu->get_seq();
 Function: Returns sequence
 Returns : sequence (an array of characters or tokens)
 Args    : none

 Title   : get_seq_string
 Usage   : $taxunit->get_seq_string($tokens_flag);
 Function: Returns sequence
 Returns : sequence (a string, wherein tokens or characters are space-delimited 
           if a true value has been passed in for $tokens)
 Args    : boolean tokens argument (optional)
2007-09-24 perl v5.28.1

Search for    or go to Top of page |  Section 3 |  Main Index

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with ManDoc.