GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages
Bio::Phylo::Matrices::Character(3) User Contributed Perl Documentation Bio::Phylo::Matrices::Character(3)
 

Bio::Phylo::Matrices::Character - A character (column) in a matrix

 # No direct usage

Objects of this type represent a single character in a matrix. By default, a matrix will adjust the number of such objects it requires automatically as its contents grow or shrink. The main function, at present, for objects of this type is to facilitate NeXML serialization of characters and their annotations.

set_weight()
 Type    : Mutator
 Title   : set_weight
 Usage   : $character->set_weight(2);
 Function: Sets character weight
 Returns : $self
 Args    : A number
    
set_codonpos()
 Type    : Mutator
 Title   : set_codonpos
 Usage   : $character->set_codonpos(2);
 Function: Sets codon position for the column
 Returns : $self
 Args    : A number
    

get_weight()
 Type    : Accessor
 Title   : get_weight
 Usage   : my $weight = $character->get_weight();
 Function: Gets character weight
 Returns : A number (default is 1)
 Args    : NONE
    
get_codonpos()
 Type    : Mutator
 Title   : get_codonpos
 Usage   : my $pos = $character->get_codonpos;
 Function: Gets codon position for the column
 Returns : 1, 2, 3 or undef
 Args    : None
    

to_xml()
Serializes characters to nexml format.
 Type    : Format convertor
 Title   : to_xml
 Usage   : my $xml = $characters->to_xml;
 Function: Converts characters object into a nexml element structure.
 Returns : Nexml block (SCALAR).
 Args    : NONE
    

There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo> for any user or developer questions and discussions.
Bio::Phylo::Matrices::TypeSafeData
This object inherits from Bio::Phylo::Matrices::TypeSafeData, so the methods defined therein are also applicable to characters objects objects.
Bio::Phylo::Manual
Also see the manual: Bio::Phylo::Manual and <http://rutgervos.blogspot.com>.

If you use Bio::Phylo in published research, please cite it:
Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. <http://dx.doi.org/10.1186/1471-2105-12-63>
2017-10-30 perl v5.28.1

Search for    or go to Top of page |  Section 3 |  Main Index

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with ManDoc.