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Bio::Phylo::Parsers::Ubiocbmeta(3) User Contributed Perl Documentation Bio::Phylo::Parsers::Ubiocbmeta(3)
 

Bio::Phylo::Parsers::Ubiocbmeta - Parser used by Bio::Phylo::IO, no serviceable parts inside

This module parses RDF metadata for uBio classification bank records. An example of such a record is here: <http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:classificationbank:11168417>
The parser creates a single Bio::Phylo::Taxa::Taxon object to which all metadata are attached as Bio::Phylo::NeXML::Meta objects. This taxon is embedded in a taxa block, or optionally in a Bio::Phylo::Project object if the "-as_project" flag was provided to the call to "parse()".

There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo> for any user or developer questions and discussions.
Bio::Phylo::IO
The uBio classification bank metadata parser is called by the Bio::Phylo::IO object. Look there to learn more about parsing.
Bio::Phylo::Manual
Also see the manual: Bio::Phylo::Manual and <http://rutgervos.blogspot.com>

If you use Bio::Phylo in published research, please cite it:
Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. <http://dx.doi.org/10.1186/1471-2105-12-63>
2017-10-30 perl v5.28.1

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