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Bio::Phylo::Taxa::TaxonLinker(3) User Contributed Perl Documentation Bio::Phylo::Taxa::TaxonLinker(3)
 

Bio::Phylo::Taxa::TaxonLinker - Superclass for objects that link to taxon objects

 use Bio::Phylo::Factory;
 my $fac = Bio::Phylo::Factory->new;
 my $node  = $fac->create_node;
 my $taxon = $fac->create_taxon;
 # just to show who's what
 if ( $node->isa('Bio::Phylo::Taxa::TaxonLinker') ) { 
    $node->set_taxon( $taxon );
 }
 
 # prints 'Bio::Phylo::Taxa::Taxon'
 print ref $node->get_taxon

This module is a superclass for objects that link to Bio::Phylo::Taxa::Taxon objects.

set_taxon()
Links the invocant object to a taxon object.
 Type    : Mutator
 Title   : set_taxon
 Usage   : $obj->set_taxon( $taxon );
 Function: Links the invocant object
           to a taxon object.
 Returns : Modified $obj
 Args    : A Bio::Phylo::Taxa::Taxon object.
    
unset_taxon()
Unlinks the invocant object from any taxon object.
 Type    : Mutator
 Title   : unset_taxon
 Usage   : $obj->unset_taxon();
 Function: Unlinks the invocant object
           from any taxon object.
 Returns : Modified $obj
 Args    : NONE
    

get_taxon()
Retrieves the Bio::Phylo::Taxa::Taxon object linked to the invocant.
 Type    : Accessor
 Title   : get_taxon
 Usage   : my $taxon = $obj->get_taxon;
 Function: Retrieves the Bio::Phylo::Taxa::Taxon
           object linked to the invocant.
 Returns : Bio::Phylo::Taxa::Taxon
 Args    : NONE
 Comments:
    

There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo> for any user or developer questions and discussions.
Bio::Phylo::Matrices::Datum
The datum object subclasses Bio::Phylo::Taxa::TaxonLinker.
Bio::Phylo::Forest::Node
The node object subclasses Bio::Phylo::Taxa::TaxonLinker.
Bio::Phylo::Manual
Also see the manual: Bio::Phylo::Manual and <http://rutgervos.blogspot.com>.

If you use Bio::Phylo in published research, please cite it:
Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. <http://dx.doi.org/10.1186/1471-2105-12-63>
2017-10-30 perl v5.28.1

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