Bio::Phylo::Unparsers::Cdao - Serializer used by Bio::Phylo::IO, no serviceable
parts inside
This module generates an RDF representation of a Bio::Phylo::Project object,
using terms from the CDAO ontology:
<http://www.evolutionaryontology.org/cdao>.
The module depends on the xsltproc utility being present in the PATH of your
system: <http://xmlsoft.org/XSLT/xsltproc2.html>. If your xsltproc is in
a different location, you can optionally specify it with the -xsltproc =>
(path) argument to the
unparse() call.
Unless an additional -xslt => (file|url) argument is passed to the
unparse() call, xsltproc will try to download the stylesheet that
transforms NeXML to RDF from this location:
<http://nexml.org/nexml/xslt/nexml2cdao.xsl>. This means that, if you
don't give the -xslt argument, your computer must be connected to the
internet.
There is a mailing list at
<https://groups.google.com/forum/#!forum/bio-phylo> for any user or
developer questions and discussions.
- Bio::Phylo::IO
- The cdao unparser is called by the Bio::Phylo::IO object. Look there to
learn how to create phylip formatted files.
- Bio::Phylo::Manual
- Also see the manual: Bio::Phylo::Manual and
<http://rutgervos.blogspot.com>.
If you use Bio::Phylo in published research, please cite it:
Rutger A Vos,
Jason Caravas,
Klaas Hartmann,
Mark A
Jensen and
Chase Miller, 2011. Bio::Phylo - phyloinformatic
analysis using Perl.
BMC Bioinformatics 12:63.
<http://dx.doi.org/10.1186/1471-2105-12-63>