NAME

bl_fastq_3p_trim() - Trim 3' end of a FASTQ object

LIBRARY

#include <biolibc/fastq.h>
-lbiolibc -lxtend

SYNOPSIS

size_t  bl_fastq_3p_trim(bl_fastq_t *read, size_t cut_pos)

ARGUMENTS

read        FASTQ read to be trimmed
cut_pos     New length and location of the null terminators

DESCRIPTION

Trim the 3' end of a FASTQ sequence and quality string at location cut_pos.

RETURN VALUES

BL_FASTQ_DATA_OK if cut_pos is between 0 and original length, BL_FASTQ_DATA_INVALID otherwise.

EXAMPLES

bl_fastq_t  read;
char        *adapter;
size_t      index;
index = bl_fastq_find_adapter_smart(&read, adapter, 3, 10);
if ( BL_FASTQ_SEQ_AE(&read, index) != '0' )


    bl_fastq_3p_trim(&read, index);