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| bl_fastx_read(3) | FreeBSD Library Functions Manual | bl_fastx_read(3) |
LIBRARY
#include <biolibc/fastx.h> -lbiolibc -lxtend
SYNOPSIS
int bl_fastx_read(bl_fastx_t *record, FILE *fastx_stream)ARGUMENTS
fastx_stream FILE stream from which FASTA data are read record Pointer to a bl_fastx_t structure to receive data
DESCRIPTION
Read a FASTA or FASTQ record from a FILE stream by calling bl_read_fasta(3) or bl_read_fastq(3). The bl_fastx_t structure must first be initialized by assigning it BL_FASTX_INIT and calling bl_fastx_init(3). See bl_fasta_read(3) and bl_fastq_read(3) for further details.RETURN VALUES
BL_READ_OK upon successful read of description and sequence BL_READ_BAD_DATA if something is amiss with input format BL_READ_EOF if no more data are availableEXAMPLES
bl_fastx_t rec = BL_FASTX_INIT;
bl_fastx_init(stdin, &rec);
while ( bl_fastx_read(stdin, &rec) != BL_READ_EOF )
bl_fastx_write(stdout, &rec, BL_FASTX_LINE_UNLIMITED);
bl_fastx_free(&rec);
SEE ALSO
bl_fastx_write(3), bl_fastq_read(3), bl_fastq_write(3), bl_fastx_free(3)
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