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| bl_fastx_write(3) | FreeBSD Library Functions Manual | bl_fastx_write(3) |
LIBRARY
#include <biolibc/fasta.h> -lbiolibc -lxtend
SYNOPSIS
int bl_fastx_write(bl_fastx_t *record, FILE *fastx_stream, size_t max_line_len)ARGUMENTS
fastx_stream FILE stream to which data are written record Pointer to a bl_fastx_t structure to be written max_line_len Maximum length of a sequence line in output
DESCRIPTION
Write a FASTA or FASTQ record from a FILE stream by calling bl_fasta_write(3) or bl_fastq_write(3). The bl_fastx_t structure must first be initialized by assigning it BL_FASTX_INIT and calling bl_fastx_init(3), and then populated by bl_fastx_read(3) or other means. Previously used variables may be reused to process another record in the same format (FASTA or FASTQ) or reinitialized by bl_fastx_free(3); See bl_fasta_write(3) and bl_fastq_write(3) for further details.RETURN VALUES
BL_WRITE_OK upon success, BL_WRITE_FAILURE if a write error occurs.EXAMPLES
bl_fastx_t rec = BL_FASTX_INIT;
bl_fastx_init(stdin, &rec);
while ( bl_fastx_read(stdin, &rec) != BL_READ_EOF )
bl_fastx_write(stdout, &rec, BL_FASTX_LINE_UNLIMITED);
bl_fastx_free(&rec);
SEE ALSO
bl_fastx_read(3), bl_fastq_read(3), bl_fastq_write(3),
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