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| bl_overlap_set_all(3) | FreeBSD Library Functions Manual | bl_overlap_set_all(3) |
LIBRARY
#include <biolibc/overlap.h> -lbiolibc -lxtend
SYNOPSIS
int bl_overlap_set_all(bl_overlap_t *overlap, uint64_t feature1_len, uint64_t feature2_len, uint64_t overlap_start, uint64_t overlap_end)ARGUMENTS
feature1_len Length of feature 1 feature2_len Length of feature 2 overlap_start Start position of overlap relative to start of feature 1 overlap_end End position of overlap relative to start of feature 1
DESCRIPTION
Set all fields in a bl_overlap_t structure. Start and end positions are 1-based regardless of the feature type. (BED file positions are 0-based and must be adjusted before passed to this function.)RETURN VALUES
BL_DATA_OK upon success. BL_DATA_INVALID is arguments don't make sense.EXAMPLES
bed_start = BL_BED_CHROM_START(bed_feature);
bed_end = BL_BED_CHROM_END(bed_feature);
gff_start = BL_GFF_CHROM_START(gff_feature);
gff_end = BL_GFF_CHROM_END(gff_feature);
bed_len = bed_end - bed_start;
gff_len = gff_end - gff_start + 1;
bl_overlap_set_all(overlap, bed_len, gff_len,
MAX(bed_start+1, gff_start),
MIN(bed_end, gff_end));
SEE ALSO
bl_overlap_print(3)
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