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| bl_sam_buff_alignment_ok(3) | FreeBSD Library Functions Manual | bl_sam_buff_alignment_ok(3) |
LIBRARY
#include <biolibc/sam-buff.h> -lbiolibc -lxtend
SYNOPSIS
bool bl_sam_buff_alignment_ok(bl_sam_buff_t *sam_buff, bl_sam_t *sam_alignment)ARGUMENTS
sam_buff Pointer to bl_sam_buff_t structure with quality specs sam_alignment Pointer to new alignment
DESCRIPTION
Verify that an alignment meets the quality requirements for the given SAM buffer. Each bl_sam_buff_t structure contains specifications for minimum quality scores as well as statistics on alignments checked, including the number of discarded alignments and a sum of the alignment scores (for calculating the average score of discarded alignments).RETURN VALUES
true if the alignment meets the quality requirements false otherwiseSEE ALSO
bl_sam_buff_check_order(3)
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