NAME

bl_sam_gff3_overlap() - Compute SAM/GFF3 overlap

LIBRARY

#include <biolibc/gff3.h>
-lbiolibc -lxtend

SYNOPSIS

int64_t bl_sam_gff3_overlap(bl_sam_t *alignment, bl_gff3_t *feature)

ARGUMENTS

alignment   Pointer to a bl_sam_t object
feature     Pointer to a bl_gff3_t object

DESCRIPTION

Return the amount of overlap between a GFF3 feature and a SAM alignment.

RETURN VALUES

The number of bases of overlap between the feature and alignment. A zero or negative return value indicates no overlap.

SEE ALSO

bl_gff3_sam_overlap(3)