LIBRARY

#include <biolibc/gff.h>
-lbiolibc -lxtend

SYNOPSIS

int64_t bl_sam_gff_overlap(bl_sam_t *alignment, bl_gff_t *feature)

ARGUMENTS

alignment   Pointer to a bl_sam_t object
feature     Pointer to a bl_gff_t object

DESCRIPTION

Return the amount of overlap between a GFF feature and a SAM alignment.

RETURN VALUES

The number of bases of overlap between the feature and alignment. A zero or negative return value indicates no overlap.

SEE ALSO

bl_gff_sam_overlap(3)